- O. Khakshoor, S. E. Wheeler, K. N. Houk, and E. T. Kool, "Measurement and Theory of Hydrogen Bonding Contribution to Isosteric DNA Base Pairs", J. Am. Chem. Soc. 134, 3154 (2012).
- Y. Lan, S. E. Wheeler, and K. N. Houk, "The Extraordinary Difference in Reactivity of Ozone (OOO) and Sulfur Dioxide (OSO): A Theoretical Study", J. Chem. Theory Comput. 7, 2104 (2011).
- S. E. Wheeler and K. N. Houk, "Are Anion/π Interactions Actually a Case of Simple Charge-Dipole Interactions?", J. Phys. Chem. A 114, 8658 (2010).
- S. E. Wheeler, A. J. McNeil, P. Müller, T. M. Swager, and K. N. Houk, "Probing Substituent Effects in Aryl-Aryl Interactions Using Stereoselective Diels-Alder Cycloadditions", J. Am. Chem. Soc. 132, 3304 (2010).
- S. E. Wheeler and K. N. Houk, "Integration Grid Errors for Meta-GGA-Predicted Reaction Energies: Origin of Grid Errors for the M06 Suite of Functionals", J. Chem. Theory Comput. 6, 395 (2010).
- J. C. Hargis, H. F. Schaefer, K. N. Houk, and S. E. Wheeler, "Non-Covalent Interactions of a Benzo[a]pyrene Diol Epoxide with DNA Base Pairs: Insight into the Formation of Adducts of (+)-BaP DE-2 with DNA", J. Phys. Chem. A 114, 2038 (2010).
- S. E. Wheeler, A. Moran, S. N. Pieniazek, and K. N. Houk, "Accurate Reaction Enthalpies and Sources of Error in DFT Thermochemistry for Aldol, Mannich, and α-Aminoxylation Reactions", J. Phys. Chem. A 113, 10376 (2009).
- S. E. Wheeler and K. N. Houk, "Through-Space Effects of Substituents Dominate Molecular Electrostatic Potentials of Substituted Arenes", J. Chem. Theory Comput. 5, 2301 (2009).
- S. E. Wheeler and K. N. Houk, "Substituent Effects in Cation/π Interactions and Electrostatic Potentials above the Centers of Substituted Benzenes Are Due Primarily to Through-Space Effects of the Substituents", J. Am. Chem. Soc. 131, 3126 (2009).
- S. E. Wheeler, K. N. Houk, P. v. R. Schleyer, and W. D. Allen, "A Hierarchy of Homodesmotic Reactions for Thermochemistry", J. Am. Chem. Soc. 131, 2547 (2009).
- S. E. Wheeler and K. N. Houk, "Origin of Substituent Effects in Edge-to-Face Aryl-Aryl Interactions", Mol. Phys. 107, 749 (2009).
- D. H. Ess, S. E. Wheeler, R. G. Iafe, L. Xu, N Çelebi-Ölçüm, and K. N. Houk, "Bifurcations on Potential Energy Surfaces of Organic Reactions", Angew. Chem. Int. Ed. 47, 7592 (2008).
- S. E. Wheeler and K. N. Houk, "Substituent Effects in the Benzene Dimer are Due to Direct Interactions of the Substituents with the Unsubstituted Benzene", J. Am. Chem. Soc. 130, 10854 (2008).
- S. E. Wheeler, D. H. Ess, and K. N. Houk, "Thinking Out of the Black Box: Accurate Barrier Heights of 1,3-Dipolar Cycloadditions of Ozone with Acetylene and Ethylene", J. Phys. Chem. A 112, 1789 (2008).